#################### # SEQUENOM EXAMPLE # # unique genotype sample1 AG snp2 A01 E.User Call Yes 1,1 # unique genotype sample1 TG snp1 A02 A.Conservative Yes 1,1 # repeated genotype sample1 TG snp1 A03 A.Conservative Yes 1,1 # unmatched genotype (skew) sample1 T snp1 A04 A.Conservative Yes 1,1 # failed but covered genotype sample1 snp1 A05 A.Conservative Yes 1,1 # failed genotype sample1 snp3 A12 A.Conservative Yes 1,1 # unique genotype (with overdata) sample2 TG snp1 A06 A.Conservative Yes 1,1 # failed genotype sample2 snp2 A07 A.Conservative Yes 1,1 # repeated failed genotype sample2 snp2 A08 A.Conservative Yes 1,1 # failed genotype sample2 snp3 A13 A.Conservative Yes 1,1 # unique genotype sample3 A snp2 A14 A.Conservative Yes 1,1 # failed genotype sample3 snp3 A14 A.Conservative Yes 1,1 # unique genotype (with unperformed snp2) sample4 TG snp1 A10 A.Conservative Yes 1,1 # failed genotype sample4 snp3 A15 A.Conservative Yes 1,1 # unknown snp (unprocessed line) sample1 C snpx A11 A.Conservative Yes 1,1 ################## # SNPLEX EXAMPLE # # unique genotype plate_sample10_B01.fsa sample10 SNPlex_48plex__Panel_v1 M5.1_050 G snp1 T G 118,05 118,05 969 969 6630 6630 1637 1637 FALSE FALSE 0 -2 0 0 0 1 # failed but covered genotype plate_sample10_B02.fsa sample10 SNPlex_48plex__Panel_v1 M5.1_051 G snp1 FALSE FALSE -2 -2 -2 -2 -2 0 # unique genotype plate_sample10_B03.fsa sample10 SNPlex_48plex__Panel_v1 M5.1_018 B snp2 A G 73,29 73,29 1516 1516 9312 9312 1221 1221 FALSE FALSE 0 -2 0 0 0 1 # repeated genotype plate_sample1_B04.fsa sample1 SNPlex_48plex__Panel_v1 M5.1_018 B snp2 A G 73,29 73,29 1516 1516 9312 9312 1221 1221 FALSE FALSE 0 -2 0 0 0 1 # failed genotype (repeated from sequenom fail) plate_sample10_B05.fsa sample1 SNPlex_48plex__Panel_v1 M5.1_051 G snp3 FALSE FALSE -2 -2 -2 -2 -2 0 # failed genotype plate_sample10_B06.fsa sample10 SNPlex_48plex__Panel_v1 M5.1_051 G snp3 FALSE FALSE -2 -2 -2 -2 -2 0